Reproduced Galaxy Workflows

Intro to DGE DESeq2 reproduction

rnaseq_differential_expression

pass public, importable

Galaxy CLI reproduction of the Intro-to-DGE count-matrix differential-expression workflow with DESeq2 and bioartifact validation.

Source: https://github.com/hbctraining/Intro-to-DGE

general_galaxy_workflow

pass public, importable

External Nextflow nf-core/demo FASTQ QC pipeline reproduced in Galaxy with FastQC, Seqtk trim, and MultiQC.

Source: https://github.com/nf-core/demo

rnaseq_differential_expression

warning public, importable

Galaxy-native reproduction of the RNAflow human RNA-seq test workflow with FastQC, HISAT2, featureCounts, and DESeq2 validation.

Source: https://github.com/hoelzer-lab/rnaflow

general_galaxy_workflow

pass public, importable

External Snakemake FASTQ QC workflow reproduced in Galaxy with FastQC and MultiQC using small public test data.

Source: https://github.com/tdayris/fair_fastqc_multiqc