pass
public, importable
| id | wf_20260523_tdayris-fair-fastqc-multiqc-snakemake-qc-reproduction |
|---|
| workflow_class | general_galaxy_workflow |
|---|
| validation_profile | general_galaxy_workflow |
|---|
| validation_status | pass |
|---|
| review_status | tested |
|---|
| source_type | github_repository |
|---|
| source_ref | c757bf9a72279e62399effb52fd8794eb6bdf3d7 |
|---|
| source_url | https://github.com/tdayris/fair_fastqc_multiqc |
|---|
| galaxy_instance | https://usegalaxy.org |
|---|
| galaxy_history_id | bbd44e69cb8906b5ee6e744aaffc562c |
|---|
| execution_surface | galaxy-cli |
|---|
| created | 2026-05-23 |
|---|
| updated | 2026-05-23 |
|---|
| tags | external-source, snakemake, fastq-qc, fastqc |
|---|
Entry README
tdayris fair_fastqc_multiqc Snakemake QC reproduction
Summary
External Snakemake FASTQ QC workflow reproduced in Galaxy with FastQC and MultiQC using small public test data.
Source
- Type: github_repository
- URL: https://github.com/tdayris/fair_fastqc_multiqc
- Reference: c757bf9a72279e62399effb52fd8794eb6bdf3d7
Galaxy Reproduction
- History: https://usegalaxy.org/histories/view?id=bbd44e69cb8906b5ee6e744aaffc562c
- Public: yes
- Importable: yes
- Execution surface: galaxy-cli
Validation
- Status: pass
- Profile: general_galaxy_workflow
Files
- Metadata: `metadata.yaml`
- Validation report: `validation_report.json`
- Provenance: `provenance.json`
Entry id: `wf_20260523_tdayris-fair-fastqc-multiqc-snakemake-qc-reproduction`
Validation Summary
| Status | pass |
|---|
| Profile | general_galaxy_workflow |
|---|
| Checks | 7 |
|---|
Checks
| Name | Status | Details |
|---|
| external_non_galaxy_source | pass | {"source_url": "https://github.com/tdayris/fair_fastqc_multiqc"} |
| bioartifact_paired_fastq | pass | {"sample": "sac_a"} |
| bioartifact_fastq | pass | {"sample": "sac_b"} |
| galaxy_uploads_ok | pass | {"dataset_count": 3} |
| fastqc_ok | pass | {"job_count": 3} |
| multiqc_ok | pass | {"output_id": "f9cad7b01a472135ce5889ad8fdc73c6"} |
| history_public_importable | pass | |
Warnings
- MultiQC used a narrow Galaxy API fallback because current galaxy-cli does not bind nested multiple-data inputs for this wrapper.
Provenance Summary
Galaxy Tools
| Name | Tool ID |
|---|
| fastqc | toolshed.g2.bx.psu.edu/repos/devteam/fastqc/fastqc/0.74+galaxy1 |
| multiqc | toolshed.g2.bx.psu.edu/repos/iuc/multiqc/multiqc/1.34+galaxy0 |
Fallbacks
- Galaxy API fallback for MultiQC nested multiple-data input.
- Galaxy API fallback for published/importable flags.
Input Sources